FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index14_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23416127 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 6015530 | 2.9302144 | 5.1304116 | 2 |
| CCAGG | 4904295 | 2.5900612 | 5.1481442 | 1 |
| CCTGG | 4917655 | 2.5823765 | 6.0680733 | 1 |
| GAAGA | 5007545 | 2.555505 | 5.2268906 | 2 |
| CTTCT | 5124575 | 2.5395052 | 5.437215 | 1 |
| AAGAA | 5019695 | 2.5027416 | 5.0930753 | 2 |
| CTGGA | 4735035 | 2.4442406 | 8.502225 | 1 |
| TCCAG | 4624275 | 2.3724217 | 5.325851 | 2 |
| CTCCT | 4570620 | 2.317283 | 6.79573 | 1 |
| CTGGG | 4316030 | 2.2804387 | 8.060855 | 1 |
| CAGGA | 4294025 | 2.229242 | 5.408155 | 1 |
| CTTCA | 4409420 | 2.1975796 | 5.479634 | 1 |
| CCCAG | 4168220 | 2.18782 | 6.8979373 | 1 |
| CTCCA | 4290575 | 2.187718 | 7.187651 | 1 |
| CAGAA | 4139315 | 2.0994616 | 5.077109 | 1 |
| CTCTG | 4028655 | 2.0551164 | 6.1592293 | 1 |
| CTGGC | 3580235 | 1.8800657 | 5.1114573 | 1 |
| TGGAA | 3655855 | 1.855107 | 5.1435533 | 2 |
| CTGAA | 3671060 | 1.8513948 | 5.3812666 | 1 |
| CTCAG | 3416590 | 1.7528354 | 5.980802 | 1 |
| CTTTG | 3412765 | 1.7016494 | 5.0076976 | 1 |
| CTTGG | 3177120 | 1.6307315 | 5.2297015 | 1 |